Class mcmc_para_cli (o2scl)

O2scl : Class List

template<class func_t, class fill_t, class data_t, class vec_t = ubvector, class stepper_t = mcmc_stepper_rw<func_t, data_t, vec_t>>
class mcmc_para_cli : public o2scl::mcmc_para_table<func_t, fill_t, data_t, ubvector, mcmc_stepper_rw<func_t, data_t, ubvector>>

MCMC class with a command-line interface.

This class forms the basis of the MCMC used in the Bayesian analysis of neutron star mass and radius in http://github.com/awsteiner/bamr .

Parameter objects for the ‘set’ command

o2scl::cli::parameter_size_t p_n_warm_up

o2scl::cli::parameter_int p_user_seed

o2scl::cli::parameter_size_t p_max_bad_steps

o2scl::cli::parameter_size_t p_n_walk

o2scl::cli::parameter_bool p_aff_inv

o2scl::cli::parameter_bool p_table_sequence

o2scl::cli::parameter_bool p_store_rejects

o2scl::cli::parameter_bool p_check_rows

o2scl::cli::parameter_bool p_couple_threads

o2scl::cli::parameter_double p_max_time

o2scl::cli::parameter_size_t p_max_iters

o2scl::cli::parameter_size_t p_file_update_iters

o2scl::cli::parameter_double p_file_update_time

o2scl::cli::parameter_string p_prefix

o2scl::cli::parameter_int p_verbose

std::vector<std::string> cl_args

The arguments sent to the command-line.

inline virtual void file_header(o2scl_hdf::hdf_file &hf)

Initial write to HDF5 file.

Customization functions

inline virtual void setup_cli(cli &cl)

Set up the ‘cli’ object.

This function just adds the four commands and the ‘set’ parameters

Protected Types

typedef o2scl::mcmc_para_table<func_t, fill_t, data_t, vec_t, stepper_t> parent_t

The parent typedef.